Basic Information
Locus ID:
jg4926
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6874576 | 6932198 | - | jg4926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 466,966.06 Da | 40.54 | 89.59 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4035 | 4109 | 7.8E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2181 | 2327 | 2.0E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1957 | 2095 | 2.2E-7 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 560 | 780 | 4.2E-31 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.2E-64 | IPR031646 |
| Pfam | PF00169 | PH domain | 802 | 910 | 1.7E-7 | IPR001849 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 105 | 3.3E-29 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3195 | 3364 | 2.7E-14 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 799 | 914 | 1.23E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 797 | 914 | 4.3E-7 | IPR011993 |
| SMART | SM00233 | PH_update | 800 | 913 | 1.9E-7 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 799 | 911 | 10.2597 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_011070276.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC105155975 [Sesamum indicum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SME6 | LOW QUALITY PROTEIN: uncharacterized protein LOC105155975 OS=Sesamum indicum OX=4182 GN=LOC105155975 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology