Basic Information
Locus ID:
jg4859
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4025818 | 4052925 | + | jg4859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 24,663.22 Da | 53.03 | 84.03 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 9 | 85 | 1.77447E-40 | IPR033896 |
| Pfam | PF01486 | K-box region | 91 | 179 | 2.3E-21 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 16 | 63 | 1.0E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 9 | 82 | 3.4E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 19 | 101 | 2.3E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 7 | 66 | 4.9E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 94 | 184 | 12.627228 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 7 | 67 | 31.230326 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 9 | 63 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 44 | 65 | 7.2E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 9 | 29 | 7.2E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 29 | 44 | 7.2E-30 | IPR002100 |
| Coils | Coil | Coil | 157 | 177 | - | - |
| Coils | Coil | Coil | 73 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_011071972.1 | agamous-like MADS-box protein AGL19 [Sesamum indicum] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SWP3 | agamous-like MADS-box protein AGL19 OS=Sesamum indicum OX=4182 GN=LOC105157291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology