Basic Information
Locus ID:
jg4697
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1795655 | 1810056 | - | jg4697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 124,649.00 Da | 43.04 | 80.98 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 915 | 949 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 482 | 1.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 407 | 951 | 8.63E-46 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 328 | 437 | 1.69E-6 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 836 | 1096 | 1.75E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 830 | 1110 | 1.2E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 313 | 506 | 6.8E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 507 | 686 | 2.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 435 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.052 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 864 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 957 | 998 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 2.0E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 7.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1042 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.572556 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 958 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 951 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 936 | 950 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_011074840.1 | protein TPR2 [Sesamum indicum] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SVV0 | protein TPR2 OS=Sesamum indicum OX=4182 GN=LOC105159458 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology