Basic Information
Locus ID:
jg4645
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Bacterial extracellular solute-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1373562 | 1377524 | - | jg4645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 59,804.96 Da | 59.34 | 87.97 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13661 | PBP2_PotD_PotF_like_1 | 134 | 498 | 1.85122E-143 | - |
| Pfam | PF13343 | Bacterial extracellular solute-binding protein | 194 | 450 | 2.1E-36 | - |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 136 | 437 | 2.85E-41 | - |
| Gene3D | G3DSA:3.40.190.10 | - | 258 | 406 | 7.3E-39 | - |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 249 | 265 | 8.1E-15 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 278 | 292 | 8.1E-15 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 296 | 315 | 8.1E-15 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 382 | 401 | 8.1E-15 | IPR001188 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31410.1 | putrescine-binding periplasmic protein-related. | 0 |
| RefSeq | XP_047967590.1 | putrescine-binding periplasmic protein PotF [Salvia hispanica] | 0 |
| P45168 | Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=potD-B PE=3 SV=1 | 0 | |
| TrEMBL | A0A2G9H9G7 | Polyamine ABC transporter substrate-binding protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_13215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4645 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14672, gene_14673, gene_14677 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004692 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24315, Sbi_jg8147 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11876, Seu_jg22277 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010862 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004336, gene:ENSEOMG00000020398 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000850, CQ.Regalona.r1.5BG0001020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020980 |
| Apiaceae | Apium graveolens | 2 | Ag3G01323, AgUnG00511 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716646 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1062.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G13161 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007328m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g27210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g034920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0985 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g03190 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0461s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04170 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.431 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003703 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12031, Lb7G35212 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2197, BH09.2367, CH09.2512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0305010, gene-QOZ80_4BG0335960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0193220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046136 |
| Poaceae | Oryza coarctata | 2 | Oco07G015060, Oco08G014560 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g51310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G217000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301416, Pt_Chr0301429 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G003600, Chr26G014820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G740600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG062680, gene_TRIDC2BG066740 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G435900.1, TraesCS2B02G457300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb071790_P001, Zm00001eb430350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22767 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20381 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.549, evm.TU.LG17.560 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g06100, gene.Posoc10g02670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.666, evm.TU.Scaffold_16_RagTag.667 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24823 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19072 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016192 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-182 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10437 |
| Salicaceae | Populus euphratica | 2 | populus_peu34162, populus_peu34163 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609595 |
| Solanaceae | Solanum chilense | 1 | SOLCI005776000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026732 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15480 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0555 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06060.v3.1 |