Basic Information
Locus ID:
jg4640
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1334977 | 1342786 | - | jg4640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 56,006.80 Da | 42.99 | 94.04 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 249 | 379 | 1.48426E-62 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 38 | 238 | 6.55528E-121 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 222 | 5.1E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 262 | 370 | 1.7E-30 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 392 | 1.65E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 26 | 244 | 2.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 245 | 403 | 1.8E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 289 | 370 | 1.9E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 55 | 252 | 3.4E-54 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 11.328565 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 26.812311 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 409 | 24.994003 | IPR001650 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_011074356.1 | eukaryotic initiation factor 4A-3 isoform X1 [Sesamum indicum] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GGG1 | Putative ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology