Basic Information
Locus ID:
jg4590
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1012101 | 1014053 | + | jg4590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 45,003.09 Da | 44.09 | 95.17 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 26 | 224 | 7.92887E-137 | - |
| CDD | cd18787 | SF2_C_DEAD | 235 | 365 | 6.73788E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 248 | 356 | 6.3E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 47 | 208 | 1.0E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 91 | 376 | 5.35E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 231 | 395 | 4.0E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 12 | 230 | 9.4E-68 | IPR027417 |
| SMART | SM00490 | helicmild6 | 275 | 356 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 41 | 238 | 2.8E-57 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 234 | 395 | 25.925152 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 53 | 223 | 29.390146 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 22 | 50 | 10.896802 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 169 | 177 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_011100200.1 | eukaryotic initiation factor 4A-14 [Sesamum indicum] | 0 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2Z7CXS1 | Eukaryotic initiation factor 4A-15-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_06903 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology