Basic Information
Locus ID:
jg4549
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 697775 | 700928 | + | jg4549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 112,753.20 Da | 39.34 | 99.49 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 92 | 151 | 3.6E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 64 | 2.8E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 688 | 967 | 1.1E-47 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 569 | 590 | 0.44 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 679 | 969 | 3.91E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 283 | 4.93E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 229 | 611 | 2.04E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 766 | 987 | 2.9E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 382 | 615 | 2.0E-58 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 178 | 4.9E-46 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 284 | 3.4E-27 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 669 | 765 | 5.3E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 285 | 381 | 8.7E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 426 | 450 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 496 | 520 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 90 | 114 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 306 | 330 | 31.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 686 | 968 | 6.0E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 544 | 568 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 211 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 235 | 259 | 7.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 26.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 686 | 976 | 38.081955 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 821 | 833 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 692 | 715 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_011093340.1 | LOW QUALITY PROTEIN: receptor-like protein kinase HSL1 [Sesamum indicum] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U7N6 | LOW QUALITY PROTEIN: receptor-like protein kinase HSL1 OS=Sesamum indicum OX=4182 GN=LOC105173316 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology