Basic Information
Locus ID:
jg4441
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 16144687 | 16145703 | + | jg4441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 37,206.71 Da | 43.55 | 71.45 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 155 | 200 | 9.1E-12 | IPR006652 |
| Pfam | PF00646 | F-box domain | 9 | 47 | 3.2E-5 | IPR001810 |
| Pfam | PF13964 | Kelch motif | 106 | 153 | 8.7E-8 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 262 | 3.14E-36 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 55 | 4.32E-9 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 65 | 297 | 1.2E-36 | IPR015915 |
| SMART | SM00612 | kelc_smart | 117 | 165 | 2.5E-8 | IPR006652 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 5.3E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 166 | 213 | 0.0076 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_012834433.1 | PREDICTED: F-box/kelch-repeat protein At2g44130-like [Erythranthe guttata] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A022RHX2 | F-box domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a009538mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology