Basic Information
Locus ID:
jg4384
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
STRUBBELIG-receptor family 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 15785035 | 15790842 | - | jg4384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 80,340.23 Da | 49.49 | 91.28 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 67 | 5.2E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 175 | 1.8E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 413 | 686 | 5.9E-38 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 94 | 113 | 0.63 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 387 | 689 | 1.26E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 236 | 5.19E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 491 | 716 | 3.9E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 264 | 2.7E-50 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 374 | 489 | 5.0E-29 | - |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 120 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 161 | 2.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 207 | 100.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 691 | 32.979584 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06820.1 | STRUBBELIG-receptor family 2. | 0 |
| RefSeq | XP_011075267.2 | protein STRUBBELIG-RECEPTOR FAMILY 2 [Sesamum indicum] | 0 |
| Q9FG24 | Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana OX=3702 GN=SRF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T4H9 | protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Sesamum indicum OX=4182 GN=LOC105159779 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4384 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59211, Sbi_jg63417 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018455 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02640, Sgl07798 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000029024 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019930, CQ.Regalona.r1.3BG0020650 |
| Apiaceae | Apium graveolens | 1 | Ag10G03031 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G007160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705384 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.791.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G30517, Ftri3G13907 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012782m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053970.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1139 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1306 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g28260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1739 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16436 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.570, evm.TU.LG15.372, evm.TU.LG15.373 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1227 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6396 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13306 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.769 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017085 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7496 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13417 |
| Salicaceae | Populus euphratica | 1 | populus_peu12293 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608785, gene-LOC132637250 |
| Solanaceae | Solanum chilense | 1 | SOLCI000372100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013267 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5158 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1618 |