Basic Information
Locus ID:
jg4300
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 15148093 | 15151993 | - | jg4300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 43,494.60 Da | 33.22 | 99.75 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 71 | 334 | 1.9E-85 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 73 | 334 | 1.27E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 98 | 394 | 2.4E-89 | IPR027417 |
| SMART | SM00382 | AAA_5 | 121 | 296 | 0.0065 | IPR003593 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 99 | 258 | 27.382038 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 267 | 339 | 18.941479 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 280 | 288 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 191 | 220 | 1.2E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 277 | 305 | 1.2E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 157 | 186 | 1.2E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 229 | 258 | 1.2E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 310 | 339 | 1.2E-57 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_011075366.1 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Sesamum indicum] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HRC0 | DNA repair protein RAD51/RHP55 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology