Basic Information
Locus ID:
jg4236
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin-associated domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 14610016 | 14614569 | - | jg4236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 11,508.95 Da | 41.92 | 105.89 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41160.2 | - | 0 |
| RefSeq | XP_011075444.1 | rhomboid-like protein 20 [Sesamum indicum] | 0 |
| Q8RXQ2 | Rhomboid-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=RBL18 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ED10 | UBA domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3799, jg4236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1726.V1.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G127900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G001410 |