Basic Information
Locus ID:
jg4144
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 13576240 | 13579344 | + | jg4144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 16,181.54 Da | 16.05 | 88.30 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 72 | 106 | 1.39583E-4 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 72 | 104 | 2.2E-7 | IPR001881 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 71 | 107 | 6.2E-8 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 30 | 108 | 7.1E-11 | - |
| SMART | SM00179 | egfca_6 | 72 | 115 | 2.1E-6 | IPR001881 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 88 | 99 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 72 | 97 | - | IPR018097 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034675123.1 | putative wall-associated receptor kinase-like 16 [Vitis riparia] | 0 |
| TrEMBL | A0A2G9HIN8 | Serine/threonine protein kinase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09939 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36390, jg4144 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.2757 |
| Poaceae | Oryza coarctata | 1 | Oco13G005450 |