Basic Information
Locus ID:
jg40505
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
AFB3
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 13865201 | 13867349 | - | jg40505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 49,866.27 Da | 36.55 | 101.42 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 55 | 71 | 0.98 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 6 | 409 | 9.81E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 449 | 3.6E-134 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 189 | 214 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 30 | 55 | 9.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 272 | 296 | 0.52 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 5 | 29 | 57.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 239 | 271 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 352 | 377 | 200.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_011098945.1 | protein AUXIN SIGNALING F-BOX 2 [Sesamum indicum] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A830CTZ3 | Protein auxin signaling F-box 3 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002254800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology