halophFGD

Basic Information

Locus ID: jg40388

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: Raffinose synthase or seed imbibition protein Sip1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr14	13127183	13129810	+	jg40388

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.36	86,069.93 Da	37.34	80.34	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	25	760	0.0	IPR008811
SUPERFAMILY	SSF51445	(Trans)glycosidases	212	562	2.34E-48	IPR017853
Gene3D	G3DSA:3.20.20.70	Aldolase class I	215	556	6.0E-10	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K06617 (raffinose synthase [EC:2.4.1.82])

Pathway:

ko00052 (Galactose metabolism) map00052 (Galactose metabolism)

Reaction:

R02411 (alpha-D-Galactosyl-(1->3)-1D-myo-inositol + Sucrose <=> myo-Inositol + Raffinose)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40390.1	Raffinose synthase family protein. Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.
RefSeq	XP_011098436.1	galactinol--sucrose galactosyltransferase [Sesamum indicum]
Swiss-Prot	Q8VWN6	Galactinol--sucrose galactosyltransferase OS=Pisum sativum OX=3888 GN=RFS PE=1 SV=1
TrEMBL	A0A6I9UI73	galactinol--sucrose galactosyltransferase OS=Sesamum indicum OX=4182 GN=LOC105177104 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19854, jg28110, jg35104, jg40388, jg8984
Aizoaceae	Mesembryanthemum crystallinum	4	gene_13436, gene_13437, gene_13635, gene_985
Amaranthaceae	Atriplex hortensis	3	Ah000079, Ah020307, Ah024385
Amaranthaceae	Beta vulgaris	4	BVRB_1g011340, BVRB_5g117710, BVRB_5g122070, BVRB_5g122080
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg30590, Sbi_jg31278, Sbi_jg31279, Sbi_jg57987 ... Sbi_jg57988
Amaranthaceae	Salicornia europaea	4	Seu_jg25617, Seu_jg25618, Seu_jg25619, Seu_jg28533
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023720
Amaranthaceae	Suaeda glauca	5	Sgl10153, Sgl15305, Sgl15355, Sgl55177, Sgl60424
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000013445, gene:ENSEOMG00000022624 ... gene:ENSEOMG00000033841, gene:ENSEOMG00000048008
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0014320, CQ.Regalona.r1.1BG0011720 ... CQ.Regalona.r1.5AG0027200, CQ.Regalona.r1.5BG0028840, CQ.Regalona.r1.5BG0028870
Anacardiaceae	Pistacia vera	4	pistato.v30007930, pistato.v30139670, pistato.v30139680 ... pistato.v30232990
Arecaceae	Cocos nucifera	2	COCNU_05G010740, COCNU_12G003120
Arecaceae	Phoenix dactylifera	2	gene-LOC103703782, gene-LOC103712674
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2670.V1.1, AsparagusV1_02.2200.V1.1 ... AsparagusV1_08.2580.V1.1, AsparagusV1_08.3262.V1.1
Asteraceae	Flaveria trinervia	1	Ftri13G08300
Brassicaceae	Arabidopsis thaliana	2	AT4G01970.1, AT5G40390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10027649m.g.v1.0, Thhalv10028420m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g01850.v2.2, Sp7g01530.v2.2
Brassicaceae	Brassica nigra	2	BniB01g026390.2N, BniB08g044420.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1864, Ceq06G1062, Ceq09G1029
Casuarinaceae	Casuarina glauca	3	Cgl02G1944, Cgl06G1104, Cgl09G1118
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g14020
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g23380
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10829, nbisL1-mrna-9591
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.474, evm.TU.LG05.317, evm.TU.LG10.274 ... evm.TU.LG10.693
Plantaginaceae	Plantago ovata	2	Pov_00016481, Pov_00024159
Plumbaginaceae	Limonium bicolor	2	Lb4G22466, Lb4G23439
Poaceae	Echinochloa crus-galli	7	AH02.504, AH04.2155, BH02.522, BH04.2309, BH04.2340 ... CH02.570, CH04.2600
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0011280, gene-QOZ80_1BG0059940 ... gene-QOZ80_2AG0111280, gene-QOZ80_2BG0164780
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0233820.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015016, gene-QYE76_049960
Poaceae	Oryza coarctata	4	Oco01G002790, Oco02G002830, Oco21G009640, Oco22G010940
Poaceae	Oryza sativa	1	LOC_Os01g07530.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G050300, gene-BS78_05G254000, gene-BS78_K260800 ... gene-BS78_05G254900, gene-BS78_05G255300, gene-BS78_K341600
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0200404, Pt_Chr0207407, Pt_Chr0300338, Pt_Chr0300373 ... Pt_Chr0505858, Pt_Chr0505861, Pt_Chr0505928, Pt_Chr0505946
Poaceae	Sporobolus alterniflorus	3	Chr02G019540, Chr03G005010, Chr05G010590
Poaceae	Thinopyrum elongatum	5	Tel1E01G732700, Tel1E01G733000, Tel1E01G733100 ... Tel3E01G162500, Telscf48101G000100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG063820, gene_TRIDC1BG072990 ... gene_TRIDC3AG011150, gene_TRIDC3BG015040
Poaceae	Triticum aestivum	5	TraesCS1A02G434900.1, TraesCS1D02G444000.1 ... TraesCS3A02G092800.1, TraesCS3B02G108000.1, TraesCS3D02G092900.2
Poaceae	Zea mays	1	Zm00001eb122980_P001
Poaceae	Zoysia japonica	2	nbis-gene-13122, nbis-gene-46001
Poaceae	Zoysia macrostachya	3	Zma_g19135, Zma_g19140, Zma_g7677
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1134, evm.TU.LG02.1274, evm.TU.LG02.1278 ... evm.TU.LG02.973, evm.TU.LG04.1367, evm.TU.LG04.1368, evm.TU.LG04.3479, evm.TU.LG05.1891, evm.TU.LG09.689, evm.TU.LG09.694, evm.TU.LG09.989, evm.TU.LG14.475, evm.TU.LG16.106, evm.TU.LG16.107
Posidoniaceae	Posidonia oceanica	5	gene.Posoc02g33670, gene.Posoc04g20950, gene.Posoc04g20960 ... gene.Posoc04g20980, gene.Posoc04g20990
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.1900, evm.TU.Scaffold_4_RagTag.448 ... evm.TU.Scaffold_9_RagTag.735
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-14730, nbisL1-mrna-14731, nbisL1-mrna-14732 ... nbisL1-mrna-21485, nbisL1-mrna-2339, nbisL1-mrna-2598, nbisL1-mrna-28914
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10259, nbisL1-mrna-13219, nbisL1-mrna-20025
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18555, nbisL1-mrna-18556, nbisL1-mrna-1880 ... nbisL1-mrna-3068
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000003l.237, evm.TU.utg000003l.637 ... evm.TU.utg000008l.287, evm.TU.utg000019l.80
Rhizophoraceae	Kandelia obovata	1	Maker00001971
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12053, nbisL1-mrna-1622
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-5306, nbisL1-mrna-8689
Salicaceae	Populus euphratica	8	populus_peu08408, populus_peu20798, populus_peu22653 ... populus_peu24068, populus_peu24069, populus_peu27367, populus_peu28687, populus_peu31353
Solanaceae	Lycium barbarum	2	gene-LOC132621444, gene-LOC132644922
Solanaceae	Solanum chilense	3	SOLCI000868600, SOLCI002260300, SOLCI007105400
Solanaceae	Solanum pennellii	3	gene-LOC107011548, gene-LOC107014142, gene-LOC107029126
Tamaricaceae	Reaumuria soongarica	2	gene_15987, gene_15988
Tamaricaceae	Tamarix chinensis	1	TC09G0971
Zosteraceae	Zostera marina	1	Zosma06g26930.v3.1