Basic Information
Locus ID:
jg40346
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 12830507 | 12831935 | + | jg40346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 18,900.01 Da | 39.12 | 78.33 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 24 | 124 | 5.94491E-42 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 17 | 123 | 4.1E-34 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 21 | 132 | 2.2E-40 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 7 | 144 | 6.2E-43 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 129 | 5.3E-33 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 129 | 38.577412 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 54 | 70 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 168 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.2 | - | 0 |
| RefSeq | XP_011098510.1 | ubiquitin-conjugating enzyme E2 5-like [Sesamum indicum] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9UKB7 | ubiquitin-conjugating enzyme E2 5-like OS=Sesamum indicum OX=4182 GN=LOC105177158 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology