Basic Information
Locus ID:
jg40231
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 12063080 | 12065702 | + | jg40231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 58,548.21 Da | 52.22 | 61.91 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 426 | 483 | 6.8E-26 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 249 | 304 | 2.2E-22 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 244 | 306 | 2.09E-24 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 417 | 485 | 6.93E-30 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 234 | 307 | 4.9E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 410 | 486 | 8.2E-36 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 247 | 305 | 1.0E-33 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 425 | 484 | 3.1E-40 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 242 | 306 | 23.215399 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 420 | 485 | 37.619537 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 106 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_011098678.1 | probable WRKY transcription factor 4 [Sesamum indicum] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9G6J9 | WRKY transcription factor 3 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26946 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology