Basic Information
Locus ID:
jg40122
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
proline-rich domain in spliceosome associated proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 11379622 | 11389836 | - | jg40122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 139,316.30 Da | 52.46 | 75.93 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04046 | PSP | 1066 | 1104 | 1.9E-12 | IPR006568 |
| Pfam | PF01011 | PQQ enzyme repeat | 263 | 293 | 1.1E-4 | IPR002372 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 65 | 340 | 9.89E-11 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 359 | 1.0E-11 | IPR015943 |
| SMART | SM00581 | testneu | 1061 | 1114 | 1.1E-10 | IPR006568 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1006 | 1022 | 9.059338 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1232 | 1249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1172 | 1256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1062 | - | - |
| Coils | Coil | Coil | 513 | 547 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16020.1 | gamete-expressed 3. Encodes GEX3, a plasma membrane localized protein expressed in the male gametophyte. Required for micropylar pollen tube guidance. Also plays a role during early embryogenesis. | 0 |
| RefSeq | XP_020554788.1 | protein GAMETE EXPRESSED 3 [Sesamum indicum] | 0 |
| Q9LFS2 | Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana OX=3702 GN=GEX3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QYT4 | CCHC-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40122 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23815 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035439 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g026290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21850, Sbi_jg29501 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15899 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008522 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63195, Sgl63331, Sgl67809 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016670, gene:ENSEOMG00000052093 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0017920, CQ.Regalona.r1.2AG0019750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30191930 |
| Apiaceae | Apium graveolens | 1 | Ag3G02167 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715945 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2604.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03975 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015867m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB02g046760.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq08G0781, Ceq08G0783, Ceq08G0785 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0778, Cgl08G0788 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4269 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.412 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024074 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07642, Lb6G31460 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2254, BH02.2358, CH02.2532 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0023670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0270260.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053663 |
| Poaceae | Oryza coarctata | 2 | Oco01G014100, Oco02G014340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G187600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0603251, Pt_Chr0603253, Pt_Chr0605188 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G016010, Chr03G010560, Chr05G017850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G373000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG032070, gene_TRIDC3BG036840 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G214800.1, TraesCS3B02G246500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb161540_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29564 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10621 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.838, evm.TU.LG25.490 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g20380 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1638 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1939, nbisL1-mrna-2085 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18308 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-2845, nbisL1-mrna-2846, nbisL1-mrna-2847 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.243 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001700 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5347 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13001, nbisL1-mrna-13002 |
| Salicaceae | Populus euphratica | 2 | populus_peu09495, populus_peu37630 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620021 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013192 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18100.v3.1 |