Basic Information
Locus ID:
jg40110
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 11281800 | 11289876 | + | jg40110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 114,274.67 Da | 45.57 | 83.00 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 152 | 204 | 2.01701E-32 | - |
| CDD | cd08368 | LIM | 179 | 254 | 6.13161E-5 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 795 | 910 | 2.1E-20 | IPR001245 |
| Pfam | PF00412 | LIM domain | 152 | 206 | 2.9E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 301 | 491 | 1.3E-90 | IPR022087 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 781 | 995 | 1.07E-39 | IPR011009 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 177 | 4.76E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 179 | 232 | 8.78E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 778 | 993 | 5.8E-41 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 147 | 211 | 6.8E-14 | - |
| SMART | SM00132 | lim_4 | 151 | 203 | 7.9E-15 | IPR001781 |
| SMART | SM00726 | uim | 72 | 91 | 54.0 | IPR003903 |
| SMART | SM00726 | uim | 103 | 122 | 8.2 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 150 | 210 | 12.097899 | IPR001781 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 548 | 595 | 9.489553 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 741 | 1020 | 18.280222 | IPR000719 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 152 | 186 | - | IPR001781 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 887 | 899 | - | IPR008266 |
| Coils | Coil | Coil | 95 | 115 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_020554749.1 | LOW QUALITY PROTEIN: protein DA1-related 1 [Sesamum indicum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8M8VEX1 | LOW QUALITY PROTEIN: protein DA1-related 1 OS=Sesamum indicum OX=4182 GN=LOC105177724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology