Basic Information
Locus ID:
jg39950
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 9767694 | 9771037 | + | jg39950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 68,954.29 Da | 43.55 | 83.67 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 462 | 1.5E-80 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 116 | 8.3E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 116 | 4.0E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 119 | 7.5E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 486 | 82.20816 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 96 | 10.116544 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 610 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_011099362.1 | BTB/POZ domain-containing protein NPY5 [Sesamum indicum] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UDV1 | BTB/POZ domain-containing protein NPY5 OS=Sesamum indicum OX=4182 GN=LOC105177807 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology