Basic Information
Locus ID:
jg3985
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine-rich repeats, typical (most populated) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11870979 | 11873537 | + | jg3985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 90,410.93 Da | 31.93 | 95.73 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 278 | 319 | 9.5E-7 | IPR025875 |
| Pfam | PF13516 | Leucine Rich repeat | 350 | 363 | 1.2 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 109 | 131 | 0.43 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 522 | 816 | 4.5E-33 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 394 | 1.17E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 818 | 1.2E-63 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 178 | 8.5E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 406 | 1.8E-40 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 594 | 823 | 5.6E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 478 | 593 | 1.2E-28 | - |
| SMART | SM00369 | LRR_typ_2 | 131 | 155 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 83 | 102 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 325 | 349 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 301 | 324 | 180.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 518 | 823 | 34.619125 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 325 | 338 | 4.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 256 | 269 | 4.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24230.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011083980.1 | probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Sesamum indicum] | 0 |
| C0LGK9 | Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana OX=3702 GN=At2g24230 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TIM0 | probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Sesamum indicum OX=4182 GN=LOC105166354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15596, jg33076, jg3985 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265900 |
| Apiaceae | Apium graveolens | 3 | Ag2G00421, Ag2G02778, Ag3G01353 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014880, COCNU_11G005370, COCNU_11G005380 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696275, gene-LOC103707793 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3377.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G01498, Ftri4G02475 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24230.1, AT5G58150.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000045m.g.v1.0, Thhalv10012745m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g03170.v2.2, Sp6g19830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g019540.2N, BniB08g013380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2552 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2692 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08450, gene.Cymno06g07670 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.279 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000855 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625400, gene-QOZ80_8BG0653310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473960.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032235 |
| Poaceae | Oryza coarctata | 2 | Oco15G005480, Oco16G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g17410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G106600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr17G011450, Chr20G008760, Chr29G008460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030040, gene_TRIDC5BG031680 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G185000.1.cds1, TraesCS5B02G183000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49471 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23884 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g18690, gene.Posoc03g12950, gene.Posoc03g12960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.123, evm.TU.Scaffold_4_RagTag.2180 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13911, nbisL1-mrna-25304 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1878, nbisL1-mrna-21282 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16562, nbisL1-mrna-4930 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.470, add.evm.TU.utg000033l.24 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17483, nbisL1-mrna-23534 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14517, nbisL1-mrna-9213 |
| Salicaceae | Populus euphratica | 2 | populus_peu05591, populus_peu12232 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602970 |
| Solanaceae | Solanum chilense | 1 | SOLCI001360200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026117 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12367_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1060 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17630.v3.1 |