Basic Information
Locus ID:
jg39790
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8092556 | 8093653 | + | jg39790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 40,055.75 Da | 46.20 | 92.27 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 98 | 363 | 2.38544E-84 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 99 | 337 | 2.3E-49 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 73 | 346 | 3.6E-80 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 64 | 365 | 1.9E-98 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 148 | 164 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 64 | - | - |
| Coils | Coil | Coil | 324 | 344 | - | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 75 | 363 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 75 | 363 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_011099574.1 | geranylgeranyl pyrophosphate synthase, chloroplastic [Sesamum indicum] | 0 |
| A0A0U3BRC5 | Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=694369 GN=GFDPS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UEC3 | geranylgeranyl pyrophosphate synthase, chloroplastic OS=Sesamum indicum OX=4182 GN=LOC105177958 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology