Basic Information
Locus ID:
jg3968
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11611459 | 11614803 | + | jg3968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 81,963.15 Da | 35.15 | 87.33 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 368 | 651 | 1.1E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 362 | 652 | 5.23E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 47 | 346 | 1.23E-26 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 362 | 654 | 1.7E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 47 | 347 | 2.2E-23 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 363 | 656 | 32.729752 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 48 | 348 | 16.627592 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 731 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58050.1 | SHV3-like 4. | 0 |
| RefSeq | XP_011084009.1 | glycerophosphodiester phosphodiesterase GDPDL7 [Sesamum indicum] | 0 |
| Q9FGT9 | Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 GN=GDPDL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5A7Q3S7 | glycerophosphodiester phosphodiesterase OS=Striga asiatica OX=4170 GN=STAS_16162 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology