Basic Information
Locus ID:
jg39595
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 4349630 | 4373043 | - | jg39595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 113,153.48 Da | 36.72 | 81.34 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 43 | 319 | 5.37475E-179 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 819 | 6.0E-50 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1006 | 8.1E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 44 | 355 | 8.3E-91 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 360 | 452 | 2.5E-19 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1009 | 1.4E-145 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 359 | 454 | 4.9E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 32 | 358 | 2.72E-107 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1009 | 7.4E-34 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 470 | 581 | 4.6E-26 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 2.3E-100 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 43 | 323 | 2.6E-121 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 402 | 458 | 3.2E-21 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 324 | 401 | 2.9E-29 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 360 | 434 | 3.9E-22 | IPR015341 |
| Coils | Coil | Coil | 948 | 968 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_011099865.1 | alpha-mannosidase [Sesamum indicum] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UXH8 | Alpha-mannosidase OS=Sesamum indicum OX=4182 GN=LOC105178167 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology