Basic Information
Locus ID:
jg39549
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 2815540 | 2822554 | + | jg39549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 85,588.56 Da | 58.91 | 70.03 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 68 | 105 | 1.9E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 355 | 648 | 2.3E-42 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 64 | 109 | 6.63E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 351 | 653 | 8.05E-81 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 349 | 664 | 3.3E-86 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 54 | 108 | 4.4E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 355 | 651 | 48.085682 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 68 | 105 | 11.352047 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 68 | 105 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 356 | 371 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 261 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.2 | - | 0 |
| RefSeq | XP_012845118.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Erythranthe guttata] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UNN9 | ubiquitin carboxyl-terminal hydrolase 17 OS=Sesamum indicum OX=4182 GN=LOC105178257 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology