Basic Information
Locus ID:
jg39507
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
domain in TBC and LysM domain containing proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 1713452 | 1719638 | + | jg39507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 42,224.65 Da | 54.02 | 69.06 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07534 | TLD | 224 | 361 | 3.0E-29 | IPR006571 |
| SMART | SM00584 | 109ultra | 198 | 362 | 1.2E-29 | IPR006571 |
| ProSiteProfiles | PS51886 | TLDc domain profile. | 199 | 362 | 27.11694 | IPR006571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 131 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39870.1 | TLD-domain containing nucleolar protein. | 0 |
| RefSeq | XP_011090546.1 | TLD domain-containing protein 2 [Sesamum indicum] | 0 |
| Q9VIH7 | GTPase-activating protein skywalker OS=Drosophila melanogaster OX=7227 GN=sky PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9TWK9 | TLD domain-containing protein 2 OS=Sesamum indicum OX=4182 GN=LOC105171208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology