Basic Information
Locus ID:
jg38714
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21659531 | 21660787 | + | jg38714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 22,567.01 Da | 42.80 | 69.47 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 82 | 134 | 1.56744E-10 | - |
| Pfam | PF12906 | RING-variant domain | 82 | 133 | 9.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 136 | 2.71E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 144 | 2.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 81 | 134 | 1.4E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 74 | 140 | 18.249525 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011085973.1 | uncharacterized protein LOC105167841 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TKP0 | uncharacterized protein LOC105167841 OS=Sesamum indicum OX=4182 GN=LOC105167841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology