Basic Information
Locus ID:
jg38712
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21647676 | 21650875 | + | jg38712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 63,780.80 Da | 37.88 | 104.02 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 279 | 528 | 9.2E-39 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 123 | 142 | 1.3 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 70 | 3.8E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 277 | 534 | 3.14E-65 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 194 | 2.68E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 335 | 545 | 2.9E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 334 | 8.5E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 210 | 2.9E-55 | IPR032675 |
| SMART | SM00220 | serkin_6 | 271 | 529 | 1.1E-17 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 231 | 533 | 30.916018 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 380 | 392 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45780.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011085976.1 | probable LRR receptor-like serine/threonine-protein kinase At5g45780 isoform X2 [Sesamum indicum] | 0 |
| C0LGU5 | Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana OX=3702 GN=At5g45780 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TJJ4 | probable LRR receptor-like serine/threonine-protein kinase At5g45780 isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105167843 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology