Basic Information
Locus ID:
jg38652
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21236252 | 21243920 | - | jg38652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 54,188.04 Da | 43.76 | 92.67 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 33 | 53 | 0.085 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 8 | 422 | 9.42E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 435 | 1.3E-124 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 382 | 406 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 333 | 356 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 31 | 56 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 6 | 30 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 357 | 381 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 273 | 297 | 13.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011086127.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9TXE4 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Sesamum indicum OX=4182 GN=LOC105167936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology