Basic Information
Locus ID:
jg38463
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19965289 | 19968363 | + | jg38463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 35,021.94 Da | 42.51 | 65.73 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 5.4284E-46 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 233 | 296 | 2.10734E-17 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 34 | 116 | 8.7E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 233 | 300 | 8.3E-12 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 28 | 129 | 3.4E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 220 | 302 | 2.23E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 216 | 306 | 1.7E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 17 | 133 | 2.1E-28 | IPR036431 |
| SMART | SM00398 | hmgende2 | 232 | 301 | 7.7E-15 | IPR009071 |
| SMART | SM00501 | bright_3 | 30 | 121 | 5.4E-29 | IPR001606 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 4.3E-24 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 233 | 300 | 13.894608 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 26.215782 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 233 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_012841669.1 | PREDICTED: high mobility group B protein 10 [Erythranthe guttata] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9I5T6 | HMG box-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02144 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology