Basic Information
Locus ID:
jg38412
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19598210 | 19604237 | + | jg38412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 84,109.19 Da | 40.58 | 90.21 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 366 | 666 | 3.19079E-160 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 348 | 1.81407E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 373 | 661 | 3.8E-26 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 57 | 182 | 6.2E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 49 | 348 | 4.97E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 367 | 667 | 1.02E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 366 | 667 | 1.1E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 349 | 1.2E-35 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 366 | 667 | 38.137737 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 350 | 37.017166 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_011097815.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Sesamum indicum] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U9Y7 | glycerophosphodiester phosphodiesterase OS=Sesamum indicum OX=4182 GN=LOC105176644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology