Basic Information
Locus ID:
jg38300
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18355595 | 18364353 | - | jg38300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 158,429.27 Da | 45.76 | 76.94 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09810 | LPOR_like_SDR_c_like | 1125 | 1437 | 0.0 | - |
| Pfam | PF00106 | short chain dehydrogenase | 1128 | 1270 | 2.8E-20 | IPR002347 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 603 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 561 | 2.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 449 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1123 | 1404 | 6.06E-38 | IPR036291 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 411 | 761 | 2.0E-54 | IPR036322 |
| Gene3D | G3DSA:3.40.50.720 | - | 1115 | 1438 | 9.9E-56 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 486 | 6.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 504 | 783 | 1.9E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 411 | 450 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 606 | 644 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 657 | 696 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 755 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 561 | 3.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 603 | 3.2E-9 | IPR001680 |
| TIGRFAM | TIGR01289 | LPOR: light-dependent protochlorophyllide reductase | 1124 | 1438 | 3.4E-170 | IPR005979 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 570 | 604 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 451 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 530 | 570 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 530 | 564 | 10.864685 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 570 | 604 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 459 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | 5.0 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 548 | 562 | - | IPR019775 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1127 | 1144 | 1.1E-6 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1202 | 1213 | 1.1E-6 | IPR002347 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 590 | 604 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 437 | 451 | 2.8E-5 | IPR020472 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1335 | 1352 | 1.1E-6 | IPR002347 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 548 | 562 | 2.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 844 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011098333.1 | WD repeat-containing protein 44 isoform X1 [Sesamum indicum] | 0 |
| Q9SDT1 | Protochlorophyllide reductase, chloroplastic OS=Daucus carota OX=4039 GN=POR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A830AXB0 | NADPH-protochlorophyllide oxidoreductase OS=Phtheirospermum japonicum OX=374723 GN=PHJA_000003100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology