Basic Information
Locus ID:
jg38293
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18285053 | 18292575 | + | jg38293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 27,236.95 Da | 68.29 | 77.78 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 127 | 176 | 9.16774E-25 | - |
| Pfam | PF13445 | RING-type zinc-finger | 129 | 173 | 1.3E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 182 | 4.57E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 210 | 2.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 175 | 7.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 176 | 12.636808 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 144 | 153 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_011082667.1 | E3 ubiquitin-protein ligase RMA1H1-like [Sesamum indicum] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TCQ1 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105165381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology