Basic Information
Locus ID:
jg38283
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18170699 | 18176343 | - | jg38283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 94,675.44 Da | 51.94 | 78.83 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 713 | 742 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 653 | 686 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 563 | 844 | 2.38E-40 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 118 | 334 | 6.09E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 538 | 711 | 3.8E-60 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 120 | 338 | 1.2E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 712 | 847 | 3.7E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 751 | 790 | 4.3 | IPR001680 |
| SMART | SM00220 | serkin_6 | 4 | 326 | 5.3E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 700 | 742 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 805 | 845 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 593 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 686 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 643 | 12.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 711 | 744 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 653 | 690 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 711 | 744 | 9.783781 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 326 | 12.004726 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 653 | 695 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 729 | 743 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 673 | 687 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 729 | 743 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 673 | 687 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 630 | 644 | 2.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 419 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_011098304.1 | protein SPA1-RELATED 4-like isoform X3 [Sesamum indicum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UE89 | protein SPA1-RELATED 4-like isoform X3 OS=Sesamum indicum OX=4182 GN=LOC105176994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology