Basic Information
Locus ID:
jg38135
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13756332 | 13761369 | + | jg38135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 38,872.27 Da | 42.16 | 76.56 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 90 | 127 | 2.09528E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 133 | 332 | 1.8E-76 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 131 | 1.89E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 144 | 335 | 7.19E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 143 | 2.5E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 199 | 1.2E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 200 | 333 | 3.5E-35 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 144 | 204 | 14.185511 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 127 | 9.686208 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_011089104.1 | E3 ubiquitin-protein ligase SINAT2-like [Sesamum indicum] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H0D6 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16445 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology