Basic Information
Locus ID:
jg3799
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin-associated domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7486233 | 7491091 | - | jg3799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 15,694.61 Da | 52.35 | 102.91 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 101 | 136 | 3.6E-6 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 80 | 140 | 8.11E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 98 | 143 | 2.9E-9 | - |
| SMART | SM00165 | uba_6 | 101 | 138 | 9.9E-6 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 99 | 139 | 12.402311 | IPR015940 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_042050370.1 | rhomboid-like protein 20 isoform X2 [Salvia splendens] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ED10 | UBA domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3799, jg4236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1726.V1.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G127900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G001410 |