Basic Information
Locus ID:
jg37967
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11269609 | 11271619 | + | jg37967 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 47,110.28 Da | 36.28 | 93.24 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 66 | 108 | 2.23829E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 189 | 228 | 1.3E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 272 | 310 | 6.4E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 331 | 370 | 5.9E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 62 | 132 | 4.0E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 160 | 410 | 3.02E-44 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 138 | 7.3E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 150 | 313 | 1.3E-34 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 135 | 4.1E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 314 | 433 | 8.9E-18 | IPR011989 |
| SMART | SM00185 | arm_5 | 189 | 229 | 8.2E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 230 | 270 | 6.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 330 | 370 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 372 | 412 | 85.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 65 | 128 | 9.5E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 271 | 311 | 0.14 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 61 | 135 | 43.018406 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 200 | 242 | 12.0574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 444 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010106453.1 | U-box domain-containing protein 13 [Morus notabilis] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A830CMV4 | RING-type E3 ubiquitin transferase OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002101300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology