Basic Information
Locus ID:
jg37788
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9506092 | 9520111 | + | jg37788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 182,784.06 Da | 39.98 | 106.19 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1053 | 1347 | 6.032E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1370 | 1590 | 6.94072E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 416 | 701 | 2.79914E-106 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 727 | 927 | 3.89969E-108 | - |
| Pfam | PF00005 | ABC transporter | 745 | 879 | 1.3E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1389 | 1537 | 7.3E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 417 | 681 | 3.1E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1056 | 1295 | 9.6E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1363 | 1603 | 4.71E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 404 | 712 | 1.18E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 722 | 949 | 7.2E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1041 | 1352 | 7.32E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 379 | 708 | 7.0E-57 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1015 | 1353 | 1.3E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1355 | 1607 | 1.3E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 709 | 969 | 2.7E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 754 | 927 | 5.9E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1398 | 1591 | 2.1E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 416 | 693 | 39.001518 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1372 | 1606 | 18.060688 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 727 | 950 | 22.922609 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1056 | 1325 | 34.054073 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 852 | 866 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_011083071.1 | ABC transporter C family member 5-like [Sesamum indicum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8F0ZV81 | ABC-type xenobiotic transporter OS=Rehmannia glutinosa OX=99300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology