Basic Information
Locus ID:
jg37761
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9250309 | 9252279 | - | jg37761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 32,151.21 Da | 64.66 | 68.90 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 158 | 203 | 2.16648E-17 | - |
| Pfam | PF13639 | Ring finger domain | 157 | 203 | 4.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 209 | 6.63E-20 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 74 | 82 | 4.45E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 209 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 202 | 1.1E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 157 | 203 | 0.0063 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 203 | 12.99088 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 266 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G30460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011083134.1 | E3 ubiquitin-protein ligase RNF12-like [Sesamum indicum] | 0 |
| Q5M974 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TGN7 | E3 ubiquitin-protein ligase RNF12-like OS=Sesamum indicum OX=4182 GN=LOC105165728 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37761 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0385s00009.v1.0 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015083 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620328 |
| Solanaceae | Solanum chilense | 2 | SOLCI001107600, SOLCI003716500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014240 |