Basic Information
Locus ID:
jg37635
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8324622 | 8325824 | - | jg37635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 44,397.80 Da | 54.04 | 103.60 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 6.63729E-22 | - |
| Pfam | PF04564 | U-box domain | 9 | 79 | 9.6E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 85 | 4.33E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 366 | 2.55E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 4.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 220 | 379 | 1.7E-10 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 93 | 217 | 5.3E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 76 | 1.1E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 83 | 37.534073 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011090297.1 | E3 ubiquitin-protein ligase PUB23 [Sesamum indicum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U1D3 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105171006 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology