Basic Information
Locus ID:
jg37569
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7740116 | 7745517 | + | jg37569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 89,159.86 Da | 59.12 | 71.38 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 733 | 771 | 3.74686E-15 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 731 | 777 | 8.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 716 | 778 | 1.94E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 708 | 784 | 4.8E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 733 | 772 | 10.128798 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 76 | - | - |
| Coils | Coil | Coil | 657 | 677 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_011088805.1 | uncharacterized protein LOC105169955 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TV43 | uncharacterized protein LOC105169955 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105169955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology