Basic Information
Locus ID:
jg37567
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7680705 | 7703036 | - | jg37567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 110,161.25 Da | 49.80 | 77.08 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 623 | 663 | 2.96152E-16 | - |
| Pfam | PF00628 | PHD-finger | 624 | 665 | 6.2E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 557 | 608 | 6.4E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 362 | 417 | 2.4E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 603 | 665 | 1.46E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 705 | 767 | 1.79E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 864 | 963 | 1.04E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 709 | 770 | 3.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 815 | 977 | 9.8E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 609 | 685 | 1.5E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 711 | 768 | 6.9E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 623 | 664 | 3.6E-12 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 815 | 971 | 9.313385 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 621 | 666 | 10.3622 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 709 | 770 | 8.519899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 624 | 663 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 161 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011089969.1 | uncharacterized protein LOC105170763 [Sesamum indicum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G3U7 | Histone acetyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology