Basic Information
Locus ID:
jg37461
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6743330 | 6752501 | - | jg37461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 65,472.84 Da | 38.63 | 92.44 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 270 | 556 | 1.42008E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 2.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 513 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 298 | 0.001 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 556 | 5.49E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 259 | 559 | 1.5E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 6.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.5 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 7.1E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.5765 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 10.363778 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 104 | 152 | 9.953152 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 559 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.091456 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 5.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 5.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 5.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011085429.1 | WD repeat-containing protein 26 [Sesamum indicum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TM09 | WD repeat-containing protein 26 OS=Sesamum indicum OX=4182 GN=LOC105167421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology