Basic Information
Locus ID:
jg3735
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5926793 | 5927890 | - | jg3735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 42,375.29 Da | 42.43 | 95.81 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 43 | 2.9E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 214 | 299 | 5.0E-10 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 55 | 1.96E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 43 | 6.4E-7 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 5.4E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 113 | 300 | 2.1E-24 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 50 | 9.02057 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_020553583.1 | F-box protein At4g19940-like [Sesamum indicum] | 0 |
| Q9C6J3 | Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN=At1g50870 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8M8VAS4 | F-box protein At4g19940-like OS=Sesamum indicum OX=4182 GN=LOC105173870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15083, jg15255, jg3735 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17879 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034745 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21164, Sbi_jg22640 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16526 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62317, Sgl67167 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0021110 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g22180.v2.2, Sp5g30880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g048830.2N |
| Plantaginaceae | Plantago ovata | 5 | Pov_00001674, Pov_00005518, Pov_00005519, Pov_00005520 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.785, evm.TU.LG17.784 |
| Salicaceae | Populus euphratica | 1 | populus_peu19120 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612212 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029230 |