halophFGD

Basic Information

Locus ID: jg37312

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	5311781	5313418	-	jg37312

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.74	31,721.40 Da	39.74	99.19	0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	26	92	1.8E-13	IPR025287

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_011081294.1	RING-H2 finger protein ATL22-like [Sesamum indicum]	0
TrEMBL	A0A2G9GMC2	GUB_WAK_bind domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21033 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg10251, jg13896, jg2005, jg23556, jg37312, jg4724, jg4863
Aizoaceae	Mesembryanthemum crystallinum	10	gene_16209, gene_16210, gene_2231, gene_23548, gene_3286 ... gene_3290, gene_3291, gene_3292, gene_3293, gene_3294
Amaranthaceae	Atriplex hortensis	8	Ah003873, Ah018649, Ah018655, Ah018658, Ah018666, Ah018667 ... Ah018677, Ah022861
Amaranthaceae	Beta vulgaris	4	BVRB_1g003160, BVRB_3g052260, BVRB_3g052270, BVRB_5g098830
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg15109, Sbi_jg15118, Sbi_jg15119, Sbi_jg24032 ... Sbi_jg3961, Sbi_jg49174, Sbi_jg55943, Sbi_jg55947, Sbi_jg55952, Sbi_jg55953, Sbi_jg7879
Amaranthaceae	Salicornia europaea	7	Seu_jg12165, Seu_jg26423, Seu_jg26425, Seu_jg26426 ... Seu_jg26430, Seu_jg26431, Seu_jg6069
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00000576, GOSA_00010640, GOSA_00020030, GOSA_00020031 ... GOSA_00020033, GOSA_00020036, GOSA_00020038, GOSA_00020040, GOSA_00020041, GOSA_00025367
Amaranthaceae	Suaeda glauca	19	Sgl01377, Sgl01385, Sgl01386, Sgl01445, Sgl06451, Sgl06461 ... Sgl06462, Sgl06532, Sgl06543, Sgl06544, Sgl10915, Sgl16269, Sgl34867, Sgl40264, Sgl52209, Sgl52232, Sgl53358, Sgl57481, Sgl58621
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000507, gene:ENSEOMG00000000873 ... gene:ENSEOMG00000015370, gene:ENSEOMG00000022583, gene:ENSEOMG00000024572, gene:ENSEOMG00000032266, gene:ENSEOMG00000032403, gene:ENSEOMG00000035807, gene:ENSEOMG00000043538, gene:ENSEOMG00000045066
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0002100, CQ.Regalona.r1.2BG0026160 ... CQ.Regalona.r1.3AG0004660, CQ.Regalona.r1.3AG0004710, CQ.Regalona.r1.3AG0004820, CQ.Regalona.r1.3AG0004850, CQ.Regalona.r1.3BG0004780, CQ.Regalona.r1.3BG0004810, CQ.Regalona.r1.3BG0004860, CQ.Regalona.r1.3BG0004900, CQ.Regalona.r1.5AG0005820, CQ.Regalona.r1.5BG0006150
Anacardiaceae	Pistacia vera	6	pistato.v30005750, pistato.v30043600, pistato.v30134390 ... pistato.v30185150, pistato.v30215830, pistato.v30216680
Apiaceae	Apium graveolens	5	Ag11G05058, Ag11G05059, Ag6G01552, Ag6G02066, Ag7G01464
Asteraceae	Flaveria trinervia	7	Ftri11G17799, Ftri14G08304, Ftri14G29919, Ftri15G01300 ... Ftri2G17479, Ftri3G21947, Ftri7G05743
Brassicaceae	Arabidopsis thaliana	6	AT1G28040.1, AT2G25410.1, AT2G46494.1, AT2G46495.1 ... AT5G36001.1, AT5G53110.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001500m.g.v1.0, Thhalv10006034m.g.v1.0 ... Thhalv10013815m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g24210.v2.2, Sp1g24220.v2.2, Sp4g28500.v2.2 ... Sp5g01650.v2.2, Sp6g15280.v2.2
Brassicaceae	Brassica nigra	8	BniB01g000960.2N, BniB01g000970.2N, BniB01g000980.2N ... BniB02g031240.2N, BniB05g033040.2N, BniB06g061860.2N, BniB08g075930.2N, BniS06172g270.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1260, Ceq03G0577, Ceq03G0578, Ceq03G0716, Ceq09G1593
Casuarinaceae	Casuarina glauca	3	Cgl02G1300, Cgl03G0684, Cgl03G0815
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11276, nbisL1-mrna-6155, nbisL1-mrna-9535
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2893, evm.TU.LG10.1534, evm.TU.LG10.1537 ... evm.TU.LG10.1538, evm.TU.LG10.1539
Plantaginaceae	Plantago ovata	8	Pov_00004151, Pov_00005380, Pov_00005381, Pov_00005382 ... Pov_00006892, Pov_00010757, Pov_00020674, Pov_00041137
Plumbaginaceae	Limonium bicolor	4	Lb1G03661, Lb4G22028, Lb6G31391, Lb6G31392
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1526, evm.TU.LG01.1527, evm.TU.LG04.2157 ... evm.TU.LG04.2158, evm.TU.LG04.3272, evm.TU.LG06.150, evm.TU.LG06.151, evm.TU.LG10.104, evm.TU.LG14.783, evm.TU.LG14.784, evm.TU.LG16.329, evm.TU.LG17.104, evm.TU.LG19.1276, evm.TU.LG24.1275
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.105, evm.TU.Scaffold_14_RagTag.384 ... evm.TU.Scaffold_16_RagTag.80, evm.TU.Scaffold_2_RagTag.1649, evm.TU.Scaffold_4258_RagTag.1
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10738, nbisL1-mrna-17971, nbisL1-mrna-18302 ... nbisL1-mrna-22328, nbisL1-mrna-3558
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20135, nbisL1-mrna-2898, nbisL1-mrna-4367
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20402, nbisL1-mrna-8335
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000022l.250, evm.TU.utg000007l.134 ... evm.TU.utg000007l.333, evm.TU.utg000009l.313, evm.TU.utg000010l.436
Rhizophoraceae	Kandelia obovata	4	Maker00005977, Maker00009012, Maker00018335, Maker00018602
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15968, nbisL1-mrna-16167, nbisL1-mrna-17173 ... nbisL1-mrna-18186, nbisL1-mrna-2743
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10711, nbisL1-mrna-10992, nbisL1-mrna-20499 ... nbisL1-mrna-6765
Salicaceae	Populus euphratica	8	populus_peu03685, populus_peu27566, populus_peu28069 ... populus_peu28072, populus_peu29505, populus_peu31563, populus_peu33916, populus_peu34533
Solanaceae	Lycium barbarum	7	gene-LOC132599973, gene-LOC132599974, gene-LOC132626353 ... gene-LOC132632061, gene-LOC132634063, gene-LOC132634789, gene-LOC132635153
Solanaceae	Solanum chilense	2	SOLCI002563300, SOLCI003475600
Solanaceae	Solanum pennellii	7	gene-LOC107012750, gene-LOC107025285, gene-LOC107027193 ... gene-LOC107028283, gene-LOC107030047, gene-LOC107030693, gene-LOC107031909
Tamaricaceae	Reaumuria soongarica	4	STRG.23332_chr05_+, gene_5255, gene_5256, gene_733
Tamaricaceae	Tamarix chinensis	6	TC01G3064, TC03G1953, TC06G0101, TC06G2510, TC10G1796 ... TC10G1797