Basic Information
Locus ID:
jg37149
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PAS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3971988 | 3978151 | - | jg37149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 81,565.17 Da | 50.18 | 76.52 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 99 | 188 | 2.43913E-8 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 468 | 714 | 8.78563E-121 | - |
| Pfam | PF13426 | PAS domain | 97 | 188 | 4.1E-11 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 462 | 712 | 1.1E-66 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 436 | 712 | 7.42E-81 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 80 | 188 | 4.71E-14 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 91 | 191 | 4.6E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 455 | 540 | 2.0E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 541 | 725 | 2.2E-59 | - |
| SMART | SM00220 | serkin_6 | 462 | 718 | 2.7E-56 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 80 | 188 | 1.5E-9 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 462 | 715 | 43.848629 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 76 | 136 | 12.582098 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 581 | 593 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 468 | 489 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 575 | 593 | 6.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 685 | 707 | 6.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 536 | 549 | 6.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 622 | 632 | 6.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 641 | 663 | 6.0E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 410 | - | - |
| Coils | Coil | Coil | 19 | 39 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_011081021.1 | serine/threonine-protein kinase EDR1 isoform X1 [Sesamum indicum] | 0 |
| Q05609 | Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9M4 | serine/threonine-protein kinase EDR1 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105164139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology