Basic Information
Locus ID:
jg37055
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3330979 | 3337803 | + | jg37055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 85,592.21 Da | 42.79 | 90.12 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 545 | 622 | 4.60696E-4 | - |
| Pfam | PF17862 | AAA+ lid domain | 645 | 685 | 3.1E-9 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 554 | 621 | 4.7E-10 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 507 | 690 | 2.71E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 554 | 715 | 6.3E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 506 | 553 | 1.8E-12 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 623 | 712 | 6.3E-42 | - |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 594 | 613 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 471 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_011073426.1 | nuclear valosin-containing protein-like [Sesamum indicum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SVG7 | nuclear valosin-containing protein-like OS=Sesamum indicum OX=4182 GN=LOC105158377 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology