Basic Information
Locus ID:
jg3692
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
UBP12
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4922515 | 4934841 | - | jg3692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 131,508.38 Da | 41.02 | 79.78 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 202 | 530 | 3.22699E-166 | - |
| CDD | cd00121 | MATH | 61 | 184 | 5.23062E-39 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 629 | 881 | 9.6E-75 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 891 | 1100 | 1.2E-55 | IPR029346 |
| Pfam | PF00917 | MATH domain | 66 | 185 | 5.0E-20 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 204 | 525 | 3.1E-47 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 556 | 1.77E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 60 | 193 | 8.67E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 689 | 806 | 5.8E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 200 | 4.5E-53 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 201 | 529 | 2.0E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 807 | 904 | 1.5E-25 | - |
| SMART | SM00061 | math_3 | 61 | 165 | 1.2E-18 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 204 | 528 | 39.531052 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 184 | 38.621994 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 444 | 461 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 205 | 220 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| Coils | Coil | Coil | 544 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_011094185.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X4 [Sesamum indicum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9U8X8 | ubiquitinyl hydrolase 1 OS=Sesamum indicum OX=4182 GN=LOC105173951 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology