Basic Information
Locus ID:
jg36904
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2359386 | 2369313 | - | jg36904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 80,044.94 Da | 38.17 | 88.58 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 9.01903E-71 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.53465E-128 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 312 | 407 | 7.6E-16 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 602 | 665 | 9.5E-10 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 8.1E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 2.3E-18 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 598 | 675 | 1.79E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 423 | 2.81E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 15 | 280 | 6.2E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 4.8E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 598 | 668 | 3.1E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 582 | 3.8E-23 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 3.4E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 1.5E-24 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 506 | 2.7E-159 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 596 | 675 | 14.176632 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 19.890118 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.838675 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 694 | - | - |
| Coils | Coil | Coil | 592 | 612 | - | - |
| Coils | Coil | Coil | 11 | 49 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_011082131.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Sesamum indicum] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TEA8 | ATP-dependent DNA helicase OS=Sesamum indicum OX=4182 GN=LOC105164975 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology