Basic Information
Locus ID:
jg36625
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 464793 | 466846 | + | jg36625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 19,619.61 Da | 46.53 | 94.66 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 3.1883E-49 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 5.5E-9 | IPR004044 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.0E-23 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 122 | 163 | 1.1E-12 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 121 | 1.3E-5 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 92 | 1.1E-45 | IPR015946 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_038974526.1 | 40S ribosomal protein S3-3 isoform X3 [Phoenix dactylifera] | 0 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5A7QYR3 | 40S ribosomal protein S3 (Fragment) OS=Striga asiatica OX=4170 GN=STAS_26335 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology