Basic Information
Locus ID:
jg36390
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ATP binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_13777_HRSCAF_13839 | 3380 | 9809 | + | jg36390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 10,520.06 Da | 26.80 | 77.55 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 7 | 41 | 4.30569E-5 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 7 | 39 | 1.1E-7 | IPR001881 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 7 | 41 | 2.95E-8 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 7 | 57 | 2.3E-9 | - |
| SMART | SM00179 | egfca_6 | 7 | 50 | 1.1E-5 | IPR001881 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 7 | 32 | - | IPR018097 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 23 | 34 | - | IPR000152 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044479302.1 | wall-associated receptor kinase 2-like [Mangifera indica] | 0 |
| TrEMBL | A0A2G9I0U0 | Serine/threonine protein kinase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36390, jg4144 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.2757 |
| Poaceae | Oryza coarctata | 1 | Oco13G005450 |